PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G05080.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 388aa    MW: 44037.2 Da    PI: 8.2339
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G05080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.58.9e-1731111995
                      HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                      +   ++ +++pk+f+++ +g+   + +++le+++ +s +v++  +k+++++++t+GW +Fvk  +L+ gD+++F+++g+s+f   v 
  ONIVA08G05080.1  31 MGDFQHEMIIPKEFVQRLKGD--IPGEIQLETRNRNSHTVRV--DKTQEKVIFTEGWAQFVKTFDLQMGDSMMFRFNGNSQF--DVI 111
                      5556788********999888..5558***************..*********************************99999..554 PP

2B342.21.4e-133013841099
                      HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      +++ + l++ +++++++ ++   +kt++  ++ g +W+++l  + +sg   + +G ++F+++n++ +gD+++F+l ++++ +++v+++r+
  ONIVA08G05080.1 301 SGRISSLSIANRYVDNYLQD---EKTIR-LSRLGDKWNIRL--SDSSGNRRMVGGCRKFAEDNDVGVGDICLFELLKNHKCTMKVHIIRA 384
                      5566789*******888433...34788.56799*******..77777777889*********************9998888****9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.0E-2020114IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-2120114IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.71623116IPR003340B3 DNA binding domain
CDDcd100171.85E-1724114No hitNo description
SMARTSM010199.8E-826116IPR003340B3 DNA binding domain
PfamPF023621.3E-1434109IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-16285385IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.35E-14286385IPR015300DNA-binding pseudobarrel domain
CDDcd100173.71E-14289383No hitNo description
SMARTSM010190.0014291385IPR003340B3 DNA binding domain
PROSITE profilePS508639.432292385IPR003340B3 DNA binding domain
PfamPF023626.4E-12299384IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MGTSCERCRR RDEQDYRNLD DSQKHFLLTM MGDFQHEMII PKEFVQRLKG DIPGEIQLET  60
RNRNSHTVRV DKTQEKVIFT EGWAQFVKTF DLQMGDSMMF RFNGNSQFDV IIVDQIGREK  120
ACSAVVDDSQ NPNVQERRVD ATETLNSSRA HSQPMPMQST TETVNHSHAR PCPMHTAVDC  180
MPLSHAHPQP MPMQFPTETV NHCHAPTGPM EMPLENVALS HAHARPLQMQ SQPTDRLTQV  240
QRGYSLSSKD QDCRVGVIPD PIIGQKTILS RVQVNVVKRK IQNIGSQIPI FVSVIGKNNA  300
SGRISSLSIA NRYVDNYLQD EKTIRLSRLG DKWNIRLSDS SGNRRMVGGC RKFAEDNDVG  360
VGDICLFELL KNHKCTMKVH IIRAKDIC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0683590.0AK068359.1 Oryza sativa Japonica Group cDNA clone:J013146O10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648707.10.0PREDICTED: B3 domain-containing protein Os08g0324300
RefseqXP_015648706.10.0PREDICTED: B3 domain-containing protein Os08g0324300
RefseqXP_015648705.10.0PREDICTED: B3 domain-containing protein Os08g0324300
RefseqXP_015648704.10.0PREDICTED: B3 domain-containing protein Os08g0324300
SwissprotQ6Z0D90.0Y8347_ORYSJ; B3 domain-containing protein Os08g0324300
TrEMBLA0A0E0I7Z20.0A0A0E0I7Z2_ORYNI; Uncharacterized protein
TrEMBLA0A0E0QHC20.0A0A0E0QHC2_ORYRU; Uncharacterized protein
TrEMBLA3BRX20.0A3BRX2_ORYSJ; Uncharacterized protein
STRINGBGIOSGA027192-PA0.0(Oryza sativa Indica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-13B3 family protein